TSC2--TSC1

Hyperlinks to databases below
COSMIC CHIMERKB CHIMERPUB CHIMERSEQ CHITARS
FARE-CAFE TICDB TUMOR_FUSION_GDPFusionCancerConjoinG
1000Genome18CancersBodymap2HPANon_Tumor_Cells
Babiceanu_DatasetBanned_DatasetKnown_FusionsONGene DatabaseBushman Cancer Gene Database
Tumor Gene Set By UniprotOesophagus_DatasetGliomas_DatasetProstate_DatasetPancreases_Dataset
GTExKlijn_DatasetFimereli_Dataset Literature Cortex_Dataset
ChromothripsisDB

Link to Genecards:

TSC2 TSC1

COSMIC

The fusion gene pair TSC2--TSC1 information is not available in COSMIC database.

ChimerKB

Top
The fusion gene pair TSC2--TSC1 information is not available in CHIMERKB (CHIMERDB 3.0) database.

ChimerPUB

Top
The fusion gene pair TSC2--TSC1 information is available in CHIMERPUB (CHIMERDB 3.0) database.

Fusion_pairTranslocationPMIDDiseaseValidationGene TypeSentence_highlight
TSC2_TSC1- 25651471perivascular epithelioid cell neoplasm FISH - Although most PEComas harbor loss-of-function TSC1/TSC2 mutations, a small subset were reported to carry TFE3 gene rearrangements.
TSC2_TSC116p13.3 / 14756965tuberous sclerosis PCR - Mutations found in this study were distributed on various exons and there was no clustering of the mutations, the widespread distribution of TSC1/TSC2 mutations hinders the development of a simple diagnostic test, and the identification of individual mutations does not provide prediction of prognosis..
TSC2_TSC1t(1;19)(q10;p10) / 22789312pilocytic astrocytoma - - Germlin mutations in MSH2/MLH1/PMS2/MSH6, CDKN2A, TSC1/TSC2, PTEN, TP53 and NF1/NF2 predispose to glial tumors in the setting of hereditary cancer predisposition syndromes.
TSC2_TSC116p13.3 / 18830229tuberous sclerosis complex - - Here we investigate the effects of putative TSC1 missense mutations identified in individuals with signs and/or symptoms of TSC on TSC1-TSC2 complex formation and mTOR signalling.
TSC2_TSC116p13.3 / 18302728tuberous sclerosis complex - - Functional characterisation of the TSC1-TSC2 complex to assess multiple TSC2 variants identified in single families affected by tuberous sclerosis complex.. /// We have used a combination of different assays to characterise the effects of a number of pathogenic TSC2 amino acid substitutions on TSC1-TSC2 complex formation and mTOR signalling.
TSC2_TSC116p13.3 / 19747374tuberous sclerosis complex - - Our results suggest that amino acid residues within the N-terminal region of TSC1 are important for TSC1 function and for maintaining the activity of the TSC1-TSC2 complex..

ChimerSEQ

Top
The fusion gene pair TSC2--TSC1 information is not available in CHIMERSEQ (CHIMERDB 3.0) database.

ChiTaRS 2.1

Top
The fusion gene pair TSC2--TSC1 information is not available in CHITARS database.

FARE-CAFE

Top
The fusion gene pair TSC2--TSC1 information is not available in FARE-CAFE.

TicDB

Top
The fusion gene pair TSC2--TSC1 information is not available in TicDB.

TUMOR FUSION Gene Data Portal

Top
The fusion gene pair TSC2--TSC1 information is not available in TUMOR FUSION Gene Data Portal.

FusionCancer

Top
The fusion gene pair TSC2--TSC1 information is not available in FusionCancer Database.

ConjoinG

Top
The fusion gene pair TSC2--TSC1 information is not available in ConjoinG Database.

1000Genome

Top
Fusion gene TSC2--TSC1 has not been seen in a healthy sample (RNA-seq data from some samples from 1000 genomes project: Greger et al., Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants, Plos One, Aug 2014 ). Therefore this candidate fusion gene has a low probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

18Cancers

Top
Fusion gene TSC2--TSC1 is not found in a RNA-seq dataset of 18 types of cancers from 600 tumor samples (B. Alaei-Mahabadia et al., Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers, PNAS, Nov. 2016 )

Bodymap2

Top
Fusion gene TSC2--TSC1 is not found in the list of known false positive fusion genes. The list has been generated from healthy human samples collected from 16 organs from Illumina BodyMap2 RNA-seq database. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

HPA

Top
Fusion gene TSC2--TSC1 is not found in a healthy sample (RNA-seq database of 27 healthy tissues from 95 human individuals). A candidate fusion gene found in this dataset has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Non_Tumor_Cells

Top
Fusion gene TSC2--TSC1 was not found among the fusion genes which have been previously reported/found in non-tumor cell lines, like for example HEK293. The genes which are observed in those list can be considered as non-somatic mutation. [Fusion gene List compiled from FusionCatcher]

Babiceanu_Dataset

Top
The fusion gene pair TSC2--TSC1 information is not available in Babiceanu_Dataset.

Banned_Dataset

Top
Fusion gene TSC2--TSC1 is not found in the list of known false positive fusion genes. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Known_Fusions

Top
Fusion gene TSC2--TSC1 has not been found in the list of fusions previously reported or published in scientific articles/reports/books/abstracts/databases, indexed by Google, Google Scholar, PubMed, etc. The list has been manually curated by FusionCatcher software. This label has only the role to answer with YES or NO the question "has ever before a given (candidate) fusion gene been published or reported?". This label does not have in anyway the role to provide the original references to the original scientific articles/reports/books/abstracts/databases for a given fusion gene.[Fusion gene List compiled from FusionCatcher]

ONGene Database

Top
The head gene TSC2 is not a known oncogene according to ONGENE database.
The tail gene TSC1 is not a known oncogene according to ONGENE database.

Bushman Cancer Gene Database

Top
The head gene TSC2 is cancer associated according to Bushman Cancer Gene database.


The tail gene TSC1 is cancer associated according to Bushman Cancer Gene database.

Tumor Gene Set By Uniprot

Top
The head gene TSC2 is proto-oncogene or tumor suppresor gene according to Uniprot database.


The tail gene TSC1 is proto-oncogene or tumor suppresor gene according to Uniprot database.

Oesophagus_Dataset

Top
Fusion gene TSC2--TSC1 is not found in oesophageal tumors from TCGA samples, which are published here.

Gliomas_Dataset

Top
Fusion gene TSC2--TSC1 is not found in the RNA-seq dataset of 272 glioblastomas, published here.

Prostate_Dataset

Top
The fusion gene pair TSC2--TSC1 information is not available in Prostate Dataset (150 prostate tumor RNAs, Robison et al, Integrative Clinical Genomics of Advanced Prostate Cancer, Cell, Vol. 161, May 2015, http://dx.doi.org/10.1016/j.cell.2015.05.001).

Pancreases_Dataset

Top
Fusion gene TSC2--TSC1 is not found in pancreatic tumor dataset, published here.

GTEx

Top
Fusion gene TSC2--TSC1 has not been found in a healthy sample (GTEx database of healthy tissues (thru FusionAnnotator)). A candidate fusion gene found in this set has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Klijin_Dataset

Top
The fusion gene pair TSC2--TSC1 information is not available in Klijn Dataset.

Fimereli_Dataset

Top
The fusion gene pair TSC2--TSC1 information is not found in Fimereli_Dataset.

Literature

Top
The fusion gene pair TSC2--TSC1 information is not found in known fusion genelist compiled from literature.

Cortex_Dataset

Top
Fusion gene TSC2--TSC1 is not found in Cortex_Dataset (Fusion genes found in healthy human brains (BA9 prefrontal cortex)) . A candidate fusion gene found in this dataset has a very high probability of being a false positive.

ChromothripsisDB

Top
The fusion gene pair TSC2--TSC1 information is not available in ChromothripsisDB database.