ROS1--FIG

Hyperlinks to databases below
COSMIC CHIMERKB CHIMERPUB CHIMERSEQ CHITARS
FARE-CAFE TICDB TUMOR_FUSION_GDPFusionCancerConjoinG
1000Genome18CancersBodymap2HPANon_Tumor_Cells
Babiceanu_DatasetBanned_DatasetKnown_FusionsONGene DatabaseBushman Cancer Gene Database
Tumor Gene Set By UniprotOesophagus_DatasetGliomas_DatasetProstate_DatasetPancreases_Dataset
GTExKlijn_DatasetFimereli_Dataset Literature Cortex_Dataset
ChromothripsisDB

Link to Genecards:

ROS1 FIG

COSMIC

The fusion gene pair ROS1--FIG information is not available in COSMIC database.

ChimerKB

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The fusion gene pair ROS1--FIG information is not available in CHIMERKB (CHIMERDB 3.0) database.

ChimerPUB

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The fusion gene pair ROS1--FIG information is available in CHIMERPUB (CHIMERDB 3.0) database.

Fusion_pairTranslocationPMIDDiseaseValidationGene TypeSentence_highlight
ROS1_FIG- 24992173colorectal carcinoma;lung cancer;adenocarcinoma FISH - Recently, small studies of colorectal carcinomas (CRCs) have suggested an incidence of EML4-ALK translocations of 0.4% to 2.4% and FIG-ROS1 translocations of 0.8%.
ROS1_FIG- 25231053cholangiocarcinoma PCR - The specificity and sensitivity of nested PCR were investigated in FIG-ROS1 positive U118MG cells in reconstitution experiments with peripheral blood mononuclear cells. /// "In conclusion, 14-16% of GBC and ECC were positive for FIG-ROS1. " /// "Formalin-fixed, paraffin-embedded tissues, derived from 65 Italian BTC patients, and six cell lines were analyzed by nested PCR to investigate the prevalence of a previously reported FIG-ROS1 fusion. " /// "We found that six out of 65 (9%) BTC patients were positive for the FIG-ROS1 fusion, comprising two out of 14 (14%) gallbladder carcinoma (GBC) patients and four out of 25 (16%) extrahepatic cholangiocarcinoma (ECC) patients. " /// "We developed a new, quick, specific, and sensitive PCR test to screen for the FIG-ROS1 fusion and applied it to a series of Italian patients with bile duct carcinoma (BTC). " /// None of the 26 intrahepatic cholangiocarcinoma cases harbored the FIG-ROS1 fusion. /// Screening for the FIG-ROS1 fusion in biliary tract carcinomas by nested PCR..
ROS1_FIG- 23052255lung cancer;adenocarcinoma FISH;PCR;RT-PCR - RACE isolated a GOPC-ROS1 (FIG-ROS1) fusion in the former and a KIF5B-RET fusion in the latter, both confirmed by RT-PCR.
ROS1_FIG- 24999209- - - Lack of GOPC-ROS1 (FIG-ROS1) rearrangement in adult human gliomas..

ChimerSEQ

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The fusion gene pair ROS1--FIG information is not available in CHIMERSEQ (CHIMERDB 3.0) database.

ChiTaRS 2.1

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The fusion gene pair ROS1--FIG information is not available in CHITARS database.

FARE-CAFE

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The fusion gene pair ROS1--FIG information is not available in FARE-CAFE.

TicDB

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The fusion gene pair ROS1--FIG information is not available in TicDB.

TUMOR FUSION Gene Data Portal

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The fusion gene pair ROS1--FIG information is not available in TUMOR FUSION Gene Data Portal.

FusionCancer

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The fusion gene pair ROS1--FIG information is not available in FusionCancer Database.

ConjoinG

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The fusion gene pair ROS1--FIG information is not available in ConjoinG Database.

1000Genome

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Fusion gene ROS1--FIG has not been seen in a healthy sample (RNA-seq data from some samples from 1000 genomes project: Greger et al., Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants, Plos One, Aug 2014 ). Therefore this candidate fusion gene has a low probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

18Cancers

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Fusion gene ROS1--FIG is not found in a RNA-seq dataset of 18 types of cancers from 600 tumor samples (B. Alaei-Mahabadia et al., Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers, PNAS, Nov. 2016 )

Bodymap2

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Fusion gene ROS1--FIG is not found in the list of known false positive fusion genes. The list has been generated from healthy human samples collected from 16 organs from Illumina BodyMap2 RNA-seq database. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

HPA

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Fusion gene ROS1--FIG is not found in a healthy sample (RNA-seq database of 27 healthy tissues from 95 human individuals). A candidate fusion gene found in this dataset has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Non_Tumor_Cells

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Fusion gene ROS1--FIG was not found among the fusion genes which have been previously reported/found in non-tumor cell lines, like for example HEK293. The genes which are observed in those list can be considered as non-somatic mutation. [Fusion gene List compiled from FusionCatcher]

Babiceanu_Dataset

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The fusion gene pair ROS1--FIG information is not available in Babiceanu_Dataset.

Banned_Dataset

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Fusion gene ROS1--FIG is not found in the list of known false positive fusion genes. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Known_Fusions

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Fusion gene ROS1--FIG has not been found in the list of fusions previously reported or published in scientific articles/reports/books/abstracts/databases, indexed by Google, Google Scholar, PubMed, etc. The list has been manually curated by FusionCatcher software. This label has only the role to answer with YES or NO the question "has ever before a given (candidate) fusion gene been published or reported?". This label does not have in anyway the role to provide the original references to the original scientific articles/reports/books/abstracts/databases for a given fusion gene.[Fusion gene List compiled from FusionCatcher]

ONGene Database

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The head gene ROS1 is a known oncogene according to ONGENE database.


The tail gene FIG is a known oncogene according to ONGENE database.

Bushman Cancer Gene Database

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The head gene ROS1 is cancer associated according to Bushman Cancer Gene database.


The tail gene FIG is cancer associated according to Bushman Cancer Gene database.

Tumor Gene Set By Uniprot

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The head gene ROS1 is proto-oncogene or tumor suppresor gene according to Uniprot database.
The tail gene FIG is not a proto-oncogene or tumor suppresor gene according to Uniprot database.

Oesophagus_Dataset

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Fusion gene ROS1--FIG is not found in oesophageal tumors from TCGA samples, which are published here.

Gliomas_Dataset

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Fusion gene ROS1--FIG is not found in the RNA-seq dataset of 272 glioblastomas, published here.

Prostate_Dataset

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The fusion gene pair ROS1--FIG information is not available in Prostate Dataset (150 prostate tumor RNAs, Robison et al, Integrative Clinical Genomics of Advanced Prostate Cancer, Cell, Vol. 161, May 2015, http://dx.doi.org/10.1016/j.cell.2015.05.001).

Pancreases_Dataset

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Fusion gene ROS1--FIG is not found in pancreatic tumor dataset, published here.

GTEx

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Fusion gene ROS1--FIG has not been found in a healthy sample (GTEx database of healthy tissues (thru FusionAnnotator)). A candidate fusion gene found in this set has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Klijin_Dataset

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The fusion gene pair ROS1--FIG information is not available in Klijn Dataset.

Fimereli_Dataset

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The fusion gene pair ROS1--FIG information is not found in Fimereli_Dataset.

Literature

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The fusion gene pair ROS1--FIG information is not found in known fusion genelist compiled from literature.

Cortex_Dataset

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Fusion gene ROS1--FIG is not found in Cortex_Dataset (Fusion genes found in healthy human brains (BA9 prefrontal cortex)) . A candidate fusion gene found in this dataset has a very high probability of being a false positive.

ChromothripsisDB

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The fusion gene pair ROS1--FIG information is not available in ChromothripsisDB database.