PAX5--FOXP1

Hyperlinks to databases below
COSMIC CHIMERKB CHIMERPUB CHIMERSEQ CHITARS
FARE-CAFE TICDB TUMOR_FUSION_GDPFusionCancerConjoinG
1000Genome18CancersBodymap2HPANon_Tumor_Cells
Babiceanu_DatasetBanned_DatasetKnown_FusionsONGene DatabaseBushman Cancer Gene Database
Tumor Gene Set By UniprotOesophagus_DatasetGliomas_DatasetProstate_DatasetPancreases_Dataset
GTExKlijn_DatasetFimereli_Dataset Literature Cortex_Dataset
ChromothripsisDB

Link to Genecards:

PAX5 FOXP1

COSMIC

The fusion gene pair PAX5--FOXP1 information is not available in COSMIC database.

ChimerKB

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The fusion gene pair PAX5--FOXP1 information is not available in CHIMERKB (CHIMERDB 3.0) database.

ChimerPUB

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The fusion gene pair PAX5--FOXP1 information is available in CHIMERPUB (CHIMERDB 3.0) database.

Fusion_pairTranslocationPMIDDiseaseValidationGene TypeSentence_highlight
PAX5_FOXP1t(3;9)(p13;p13) / 21962897acute lymphoblastic leukemia;lymphoblastic leukemia;leukemia - - The PAX5-FOXP1 translocation is a nonrandom aberration, which is recurrent in both childhood and in adult B-ALL, and may contribute to leukemogenesis by blocking differentiation of hematopoietic cells into mature B-cells..

ChimerSEQ

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The fusion gene pair PAX5--FOXP1 information is available in CHIMERSEQ (CHIMERDB 3.0) database.

Fusion_pair5'Gene Junction (Chr/Position/Strand)3'Gene Junction (Chr/Position/Strand)5'Gene_locus3'Gene_locusBreakpoint_TypeGenome_BuildFrameChr_infoCancertype_or_diseaseBarcodeIDGene TypeSource
PAX5_FOXP1chr9/37002676/ chr3/71064770/ 9p13.2 3p13 Exonic hg19 - Inter-chr NA EU784145 Oncogene; ChiTaRs
PAX5_FOXP1chr9/37034075/ chr3/71008061/ 9p13.2 3p13 Exonic hg19 - Inter-chr acute lymphoblastic leukemia;lymphoblastic lymphoma;B cell acute lymphoblastic leukemia DQ845346 Oncogene; ChiTaRs

ChiTaRS 2.1

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The fusion gene pair PAX5--FOXP1 information is available in CHITARS database.

OrganismChimeraIDFusion genepairHead geneTail gene
GeneChromosomeGenomic_startGenomic_stopStrandFusiongene_startposFusiongene_endpos%IdentGeneChromosomeGenomic_startGenomic_stopStrandFusiongene_startposFusiongene_endpos%Ident
Human DQ845346PAX5--FOXP1 PAX59 36966545 37034075 - 1 828 100 FOXP13 71008061 71161791 - 825 3018 100
Human EU784145PAX5--FOXP1 PAX59 37002645 37002676 - 1 32 100 FOXP13 71064770 71064806 - 31 67 100

FARE-CAFE

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The fusion gene pair PAX5--FOXP1 information is available in FARE-CAFE.

Cancer Information
Fusion_ProteinCancer_TypeFP_Experimental_MethodFP_KaryotypeFP_Reference
PAX5-FOXP1 Pediatric acute lymphoblastic leukemia FISH,RT-PCR t(3;9)(p13,p13 ) PubMed:18697940

Genomic Information
Fusion_ProteinFusion_Protein_Isoforms5'_ProteinF_B_PFBP_in_Exon/Intron5'_Protein_on_Positive/Negative_Strands3'_ProteinS_B_P3'_Protein_on_Positive/Negative_StrandsSBP_in_Exon/IntronFusion_Protein_mRNA_sequenceFusion_Protein_ReferenceFusion_Protein_GenbankID
PAX5-FOXP1 PAX5-FOXP1 PAX5 36966566 1 0 FOXP1 _ 1 _ gagcccatcaagcccgagcagGcacttcaggtggcaagacag 17344859 _
PAX5-FOXP1 PAX5-FOXP1 PAX5 _ _ 0 FOXP1 _ 1 _ CAAGAGAGACGAAGtTTGTCCCATGAG 18697940 _

Domains and DDI Information
Fusion_ProteinFusion_Protein_IsoformsDomains_in_5'PartnerDDIs_for_Domains_in_5'PartnerDomains_in_3'PartnerDDIs_for_Domains_in_3'Partner5'_Protein5'P_Domains5'P_Domains_DDI_partners3'_Protein3'P_Domains3'P_Domains_DDI_partnersMissing_FP_DomainsMissing_FP_Domains_DDI
PAX5-FOXP1 PAX5-FOXP1 1) Pax2_C
- - -PAX5 1) PAX
2) Pax2_C
1) Ets
FOXP1 - - - -
PAX5-FOXP1 PAX5-FOXP1 - - - -PAX5 1) PAX
2) Pax2_C
1) Ets
FOXP1 - - 1) PAX
2) Pax2_C
1) Ets

miRNA Information
Fusion_ProteinmiRNAs_Targets_Fusion_proteinMissing_MiRNAs_Targets_Fusion_proteinFP_miRNA_Validation_method
PAX5-FOXP1 hsa-miR-1hsa-miR-122-5phsa-miR-34a-5phsa-miR-335-5phsa-miR-33a-5phsa-miR-22-3phsa-miR-1229-3phsa-miR-320ahsa-miR-100-5p _ Report assay,Western Blot,Microarray,qPCR,NGS

Transcription Factors Information
Fusion_Protein5'P_Ref_mRNA_seqIDFP_Transcription_factorsFP_Missing_TFsFP_TF_Reference
PAX5-FOXP1 NM_001280547.1 - 1) STAT1
2) TRIM28_HUMAN
3) MITF_HUMAN
4) RB1_HUMAN
5) RBL2_HUMAN
6) P53_HUMAN
7) RUNX1_HUMAN
8) PRDM14_HUMAN
9) ESTROGEN RECEPTOR ALPHA_HUMAN
10) ETS1_HUMAN
11) EGR1_HUMAN
12) FOS_HUMAN
13) GATA3_HUMAN
14) GATA2_HUMAN
15) SOX2_HUMAN
16) E2F1_HUMAN
17) TAL1_HUMAN
18) CTCF_HUMAN
19) BRG1_HUMAN
20) HNF4A_HUMAN
21) TFAP2C_HUMAN
22) FOXA1_HUMAN
23) CEBPA_HUMAN
24) ESR1_HUMAN
25) ESR2_HUMAN A
26) FOXP1_HUMAN A
27) NR1H3_HUMAN A
28) SPI1_HUMAN A
29) VDR_HUMAN
-

TicDB

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The fusion gene pair PAX5--FOXP1 information is available in TICDB.
HeadGeneTailGenePubmedIDSequence
PAX5 FOXP1 17344859 gagcccatcaagcccgagcagGcacttcaggtggcaagacag
PAX5 FOXP1 18697940 CAAGAGAGACGAAGtTTGTCCCATGAG

TUMOR FUSION Gene Data Portal

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The fusion gene pair PAX5--FOXP1 information is not available in TUMOR FUSION Gene Data Portal.

FusionCancer

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The fusion gene pair PAX5--FOXP1 information is not available in FusionCancer Database.

ConjoinG

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The fusion gene pair PAX5--FOXP1 information is not available in ConjoinG Database.

1000Genome

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Fusion gene PAX5--FOXP1 has not been seen in a healthy sample (RNA-seq data from some samples from 1000 genomes project: Greger et al., Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants, Plos One, Aug 2014 ). Therefore this candidate fusion gene has a low probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

18Cancers

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Fusion gene PAX5--FOXP1 is not found in a RNA-seq dataset of 18 types of cancers from 600 tumor samples (B. Alaei-Mahabadia et al., Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers, PNAS, Nov. 2016 )

Bodymap2

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Fusion gene PAX5--FOXP1 is not found in the list of known false positive fusion genes. The list has been generated from healthy human samples collected from 16 organs from Illumina BodyMap2 RNA-seq database. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

HPA

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Fusion gene PAX5--FOXP1 is not found in a healthy sample (RNA-seq database of 27 healthy tissues from 95 human individuals). A candidate fusion gene found in this dataset has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Non_Tumor_Cells

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Fusion gene PAX5--FOXP1 was not found among the fusion genes which have been previously reported/found in non-tumor cell lines, like for example HEK293. The genes which are observed in those list can be considered as non-somatic mutation. [Fusion gene List compiled from FusionCatcher]

Babiceanu_Dataset

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The fusion gene pair PAX5--FOXP1 information is not available in Babiceanu_Dataset.

Banned_Dataset

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Fusion gene PAX5--FOXP1 is not found in the list of known false positive fusion genes. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Known_Fusions

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Fusion gene PAX5--FOXP1 has not been found in the list of fusions previously reported or published in scientific articles/reports/books/abstracts/databases, indexed by Google, Google Scholar, PubMed, etc. The list has been manually curated by FusionCatcher software. This label has only the role to answer with YES or NO the question "has ever before a given (candidate) fusion gene been published or reported?". This label does not have in anyway the role to provide the original references to the original scientific articles/reports/books/abstracts/databases for a given fusion gene.[Fusion gene List compiled from FusionCatcher]

ONGene Database

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The head gene PAX5 is not a known oncogene according to ONGENE database.


The tail gene FOXP1 is a known oncogene according to ONGENE database.

Bushman Cancer Gene Database

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The head gene PAX5 is cancer associated according to Bushman Cancer Gene database.


The tail gene FOXP1 is cancer associated according to Bushman Cancer Gene database.

Tumor Gene Set By Uniprot

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The head gene PAX5 is proto-oncogene or tumor suppresor gene according to Uniprot database.
The tail gene FOXP1 is not a proto-oncogene or tumor suppresor gene according to Uniprot database.

Oesophagus_Dataset

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Fusion gene PAX5--FOXP1 is not found in oesophageal tumors from TCGA samples, which are published here.

Gliomas_Dataset

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Fusion gene PAX5--FOXP1 is not found in the RNA-seq dataset of 272 glioblastomas, published here.

Prostate_Dataset

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The fusion gene pair PAX5--FOXP1 information is not available in Prostate Dataset (150 prostate tumor RNAs, Robison et al, Integrative Clinical Genomics of Advanced Prostate Cancer, Cell, Vol. 161, May 2015, http://dx.doi.org/10.1016/j.cell.2015.05.001).

Pancreases_Dataset

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Fusion gene PAX5--FOXP1 is not found in pancreatic tumor dataset, published here.

GTEx

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Fusion gene PAX5--FOXP1 has not been found in a healthy sample (GTEx database of healthy tissues (thru FusionAnnotator)). A candidate fusion gene found in this set has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Klijin_Dataset

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The fusion gene pair PAX5--FOXP1 information is not available in Klijn Dataset.

Fimereli_Dataset

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The fusion gene pair PAX5--FOXP1 information is not found in Fimereli_Dataset.

Literature

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The fusion gene pair PAX5--FOXP1 information is not found in known fusion genelist compiled from literature.

Cortex_Dataset

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Fusion gene PAX5--FOXP1 is not found in Cortex_Dataset (Fusion genes found in healthy human brains (BA9 prefrontal cortex)) . A candidate fusion gene found in this dataset has a very high probability of being a false positive.

ChromothripsisDB

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The fusion gene pair PAX5--FOXP1 information is not available in ChromothripsisDB database.