CTNNB1--TCF

Hyperlinks to databases below
COSMIC CHIMERKB CHIMERPUB CHIMERSEQ CHITARS
FARE-CAFE TICDB TUMOR_FUSION_GDPFusionCancerConjoinG
1000Genome18CancersBodymap2HPANon_Tumor_Cells
Babiceanu_DatasetBanned_DatasetKnown_FusionsONGene DatabaseBushman Cancer Gene Database
Tumor Gene Set By UniprotOesophagus_DatasetGliomas_DatasetProstate_DatasetPancreases_Dataset
GTExKlijn_DatasetFimereli_Dataset Literature Cortex_Dataset
ChromothripsisDB

Link to Genecards:

CTNNB1 TCF

COSMIC

The fusion gene pair CTNNB1--TCF information is not available in COSMIC database.

ChimerKB

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The fusion gene pair CTNNB1--TCF information is not available in CHIMERKB (CHIMERDB 3.0) database.

ChimerPUB

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The fusion gene pair CTNNB1--TCF information is available in CHIMERPUB (CHIMERDB 3.0) database.

Fusion_pairTranslocationPMIDDiseaseValidationGene TypeSentence_highlight
CTNNB1_TCF10p11.2 / 11295046uterine neoplasm FISH - Mouse Frizzled-8, encoding a WNT receptor, is a potent cancer-associated gene to activate the beta-catenin-TCF pathway. /// Up-regulation of FZD8 might play key roles in several types of human cancer through activation of the beta-catenin-TCF pathway..
CTNNB1_TCF3p14.3 / 12p13.33 / 15754042- - - Canonical WNTs (WNT2, WNT2B, etc) activate the beta-catenin-TCF pathway to induce carcinogenesis, while non-canonical WNTs (WNT5A, WNT11, etc) activate the planar cell polarity (PCP) pathway to induce cell motility and metastasis.
CTNNB1_TCF1p36.32 / 11712074gastric cancer - - As LZIC contains ICAT homologous domain, LZIC might inhibit the interaction between beta-catenin and TCF transcription factors, just like ICAT, and, up-regulation of LZIC in gastric cancer might be due to a negative feed-back mechanism to inhibit the WNT - beta-catenin - TCF signaling pathway.. /// "As ICAT might be a tumor suppressor gene with the potential to negatively regulate the WNT - beta-catenin - TCF signaling pathway, ICAT related gene in the human genome draft sequence was searched for. "
CTNNB1_TCF- 12012006non small cell lung cancer;squamous cell carcinoma;leukemia;breast cancer;lung cancer;melanoma;sarcoma PCR - WNT2 and WNT2B isoform 2 (WNT2B2) are positive regulators of the WNT - beta-catenin - TCF signaling pathway.
CTNNB1_TCF- 18498136esophageal cancer - - Frequently rearranged in advanced T-cell lymphomas-1 (FRAT1), overexpressed in some ESCC lines, is a positive regulator of beta-catenin/TCF pathway. /// "In addition, FRAT1 overexpression induced the nuclear accumulation of beta-catenin and promoted the transcriptional activity of beta-catenin/TCF. " /// FRAT1 overexpression leads to aberrant activation of beta-catenin/TCF pathway in esophageal squamous cell carcinoma.. /// "However, little is known about the molecular relationship between FRAT1 and beta-catenin/TCF in ESCC. " /// "Taken together, these results support the novel hypothesis that aberrant activation of beta-catenin/TCF pathway in esophageal cancer appears to be due to upstream events such as FRAT1 overexpression, and c-Myc may be an important element in oncogenesis of human ESCC induced by FRAT1.. "

ChimerSEQ

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The fusion gene pair CTNNB1--TCF information is not available in CHIMERSEQ (CHIMERDB 3.0) database.

ChiTaRS 2.1

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The fusion gene pair CTNNB1--TCF information is not available in CHITARS database.

FARE-CAFE

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The fusion gene pair CTNNB1--TCF information is not available in FARE-CAFE.

TicDB

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The fusion gene pair CTNNB1--TCF information is not available in TicDB.

TUMOR FUSION Gene Data Portal

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The fusion gene pair CTNNB1--TCF information is not available in TUMOR FUSION Gene Data Portal.

FusionCancer

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The fusion gene pair CTNNB1--TCF information is not available in FusionCancer Database.

ConjoinG

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The fusion gene pair CTNNB1--TCF information is not available in ConjoinG Database.

1000Genome

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Fusion gene CTNNB1--TCF has not been seen in a healthy sample (RNA-seq data from some samples from 1000 genomes project: Greger et al., Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants, Plos One, Aug 2014 ). Therefore this candidate fusion gene has a low probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

18Cancers

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Fusion gene CTNNB1--TCF is not found in a RNA-seq dataset of 18 types of cancers from 600 tumor samples (B. Alaei-Mahabadia et al., Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers, PNAS, Nov. 2016 )

Bodymap2

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Fusion gene CTNNB1--TCF is not found in the list of known false positive fusion genes. The list has been generated from healthy human samples collected from 16 organs from Illumina BodyMap2 RNA-seq database. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

HPA

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Fusion gene CTNNB1--TCF is not found in a healthy sample (RNA-seq database of 27 healthy tissues from 95 human individuals). A candidate fusion gene found in this dataset has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Non_Tumor_Cells

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Fusion gene CTNNB1--TCF was not found among the fusion genes which have been previously reported/found in non-tumor cell lines, like for example HEK293. The genes which are observed in those list can be considered as non-somatic mutation. [Fusion gene List compiled from FusionCatcher]

Babiceanu_Dataset

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The fusion gene pair CTNNB1--TCF information is not available in Babiceanu_Dataset.

Banned_Dataset

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Fusion gene CTNNB1--TCF is not found in the list of known false positive fusion genes. A candidate fusion gene found in this list has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Known_Fusions

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Fusion gene CTNNB1--TCF has not been found in the list of fusions previously reported or published in scientific articles/reports/books/abstracts/databases, indexed by Google, Google Scholar, PubMed, etc. The list has been manually curated by FusionCatcher software. This label has only the role to answer with YES or NO the question "has ever before a given (candidate) fusion gene been published or reported?". This label does not have in anyway the role to provide the original references to the original scientific articles/reports/books/abstracts/databases for a given fusion gene.[Fusion gene List compiled from FusionCatcher]

ONGene Database

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The head gene CTNNB1 is a known oncogene according to ONGENE database.
The tail gene TCF is not a known oncogene according to ONGENE database.

Bushman Cancer Gene Database

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The head gene CTNNB1 is cancer associated according to Bushman Cancer Gene database.
The tail gene TCF is not cancer associated according to Bushman Cancer Gene database.

Tumor Gene Set By Uniprot

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The head gene CTNNB1 is not a proto-oncogene or tumor suppresor gene according to Uniprot database.
The tail gene TCF is not a proto-oncogene or tumor suppresor gene according to Uniprot database.

Oesophagus_Dataset

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Fusion gene CTNNB1--TCF is not found in oesophageal tumors from TCGA samples, which are published here.

Gliomas_Dataset

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Fusion gene CTNNB1--TCF is not found in the RNA-seq dataset of 272 glioblastomas, published here.

Prostate_Dataset

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The fusion gene pair CTNNB1--TCF information is not available in Prostate Dataset (150 prostate tumor RNAs, Robison et al, Integrative Clinical Genomics of Advanced Prostate Cancer, Cell, Vol. 161, May 2015, http://dx.doi.org/10.1016/j.cell.2015.05.001).

Pancreases_Dataset

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Fusion gene CTNNB1--TCF is not found in pancreatic tumor dataset, published here.

GTEx

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Fusion gene CTNNB1--TCF has not been found in a healthy sample (GTEx database of healthy tissues (thru FusionAnnotator)). A candidate fusion gene found in this set has a very high probability of being a false positive. [Fusion gene List compiled from FusionCatcher]

Klijin_Dataset

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The fusion gene pair CTNNB1--TCF information is not available in Klijn Dataset.

Fimereli_Dataset

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The fusion gene pair CTNNB1--TCF information is not found in Fimereli_Dataset.

Literature

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The fusion gene pair CTNNB1--TCF information is not found in known fusion genelist compiled from literature.

Cortex_Dataset

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Fusion gene CTNNB1--TCF is not found in Cortex_Dataset (Fusion genes found in healthy human brains (BA9 prefrontal cortex)) . A candidate fusion gene found in this dataset has a very high probability of being a false positive.

ChromothripsisDB

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The fusion gene pair CTNNB1--TCF information is not available in ChromothripsisDB database.