Link to Genecards: | CLTC | TFE3 |
Link |
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CLTC--TFE3 |
ChimerKB | Top |
Fusion_pair | 5'Gene Junction (Chr/Position/Strand) | 3'Gene Junction (Chr/Position/Strand) | Breakpoint_Type | Genome_Build | Disease | Validation | PMID | Gene Type | Source |
---|---|---|---|---|---|---|---|---|---|
CLTC_TFE3 | -/3070/ | -/1146/ | Exonic | hg19 | - | - | - | - | Cosmic_recurrent |
CLTC_TFE3 | -/-/ | -/-/ | - | hg19 | renal adenocarcinoma | - | 12917640 | - | Cosmic_nonrecurrent |
CLTC_TFE3 | -/0/ | -/0/ | Exonic | hg18 | - | - | - | - | TICdb |
CLTC_TFE3 | -/-/ | -/-/ | - | hg18 | renal cell carcinoma | - | 12917640 | - | OMIM |
ChimerPUB | Top |
ChimerSEQ | Top |
ChiTaRS 2.1 | Top |
FARE-CAFE | Top |
Fusion_Protein | Cancer_Type | FP_Experimental_Method | FP_Karyotype | FP_Reference |
---|---|---|---|---|
CLTC-TFE3 | Renal cell carcinoma | RT–PCR,5'RACE,Immunohistochemistry | t(X;17)(p11.2;q23) | PubMed: 12917640 |
Fusion_Protein | Fusion_Protein_Isoforms | 5'_Protein | F_B_P | FBP_in_Exon/Intron | 5'_Protein_on_Positive/Negative_Strands | 3'_Protein | S_B_P | 3'_Protein_on_Positive/Negative_Strands | SBP_in_Exon/Intron | Fusion_Protein_mRNA_sequence | Fusion_Protein_Reference | Fusion_Protein_GenbankID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
CLTC-TFE3 | CLTC-TFE3 | CLTC | _ | _ | 1 | TFE3 | _ | 0 | _ | CTGGAACTTATTAAtCTGCCTGTGTCAGGG | 12917640 | _ |
Fusion_Protein | Fusion_Protein_Isoforms | Domains_in_5'Partner | DDIs_for_Domains_in_5'Partner | Domains_in_3'Partner | DDIs_for_Domains_in_3'Partner | 5'_Protein | 5'P_Domains | 5'P_Domains_DDI_partners | 3'_Protein | 3'P_Domains | 3'P_Domains_DDI_partners | Missing_FP_Domains | Missing_FP_Domains_DDI |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CLTC-TFE3 | CLTC-TFE3 | - | - | - | - | CLTC |
1) Clathrin_propel 2) Clathrin-link 3) Clathrin_H_link 4) Clathrin |
1) Clathrin_propel , Clathrin-link , Arrestin_C 2) Clathrin_propel , Clathrin_H_link 3) Clathrin-link 4) Clathrin , Clathrin_lg_ch | TFE3 |
1) MITF_TFEB_C_3_N 2) HLH 3) DUF3371 |
1) HLH , Myc-LZ , PAS , LIM |
1) Clathrin_propel 2) Clathrin-link 3) Clathrin_H_link 4) Clathrin 5) MITF_TFEB_C_3_N 6) HLH 7) DUF3371 |
1) Clathrin_propel , Clathrin-link , Arrestin_C 2) Clathrin_propel , Clathrin_H_link 3) Clathrin-link 4) Clathrin , Clathrin_lg_ch 5) HLH , Myc-LZ , PAS , LIM |
Fusion_Protein | miRNAs_Targets_Fusion_protein | Missing_MiRNAs_Targets_Fusion_protein | FP_miRNA_Validation_method |
---|---|---|---|
CLTC-TFE3 | hsa-miR-335-5p, hsa-miR-455-3p | hsa-miR-155-5p, hsa-miR-1, hsa-miR-99a-3p, hsa-miR-615-3p, hsa-miR-503-5p, hsa-miR-484, hsa-miR-106b-5p, hsa-miR-92a-3p, hsa-miR-16-5p, hsa-let-7e-5p, hsa-miR-4326 | Microarray,NGS |
Fusion_Protein | 5'P_Ref_mRNA_seqID | FP_Transcription_factors | FP_Missing_TFs | FP_TF_Reference |
---|---|---|---|---|
CLTC-TFE3 | NM_001288653.1 | - | - | - |
TicDB | Top |
HeadGene | TailGene | PubmedID | Sequence |
---|---|---|---|
CLTC | TFE3 | 12917640 | CTGGAACTTATTAAtCTGCCTGTGTCAGGG |
TUMOR FUSION Gene Data Portal | Top |
FusionCancer | Top |
ConjoinG | Top |
1000Genome | Top |
18Cancers | Top |
Bodymap2 | Top |
HPA | Top |
Non_Tumor_Cells | Top |
Babiceanu_Dataset | Top |
Banned_Dataset | Top |
Known_Fusions | Top |
ONGene Database | Top |
Bushman Cancer Gene Database | Top |
Tumor Gene Set By Uniprot | Top |
Oesophagus_Dataset | Top |
Gliomas_Dataset | Top |
Prostate_Dataset | Top |
Pancreases_Dataset | Top |
GTEx | Top |
Klijin_Dataset | Top |
Fimereli_Dataset | Top |
Literature | Top |
Cortex_Dataset | Top |
ChromothripsisDB | Top |